SERF
De Novo Sequence Analysis of Genomic Data from Next Generation Sequencers to identify biomarkers.
SERF MASK
De novo Identification and Masking of Repeats in Genomic Data from Next Generation Sequencers.
SERF DB
Database of results from SERF analysis of Genomes.
SERF CHART
Graphical data visualization of SERF analysis results
SERF UTILS
Cluster SERF analysis results by size, position, motif and totals
STAR
Alignment of large high-throughput sequencing reads to a reference genome.
BWA
Alignment of Short Reads from Next Generation Sequencers to a Reference Genome.
BOWTIE
BOWTIE2
Alignment of Reads from Next Generation Sequencers to a Reference Genome.
SAMTOOLS
Manipulation of read alignments including sorting, merging, indexing, retrieval of reads and Mpileups.
BCFTOOLS
Analytics and utilities for CNVs, Consensus, Annotations and other Variant Calling using VCF or BCF data.
VCFTOOLS
Analytics and utilities for Variant Calling using VCF data.
FASTQC
A high throughput Quality Control analysis of sequenced reads
CUTADAPT
Remove adapter sequences from high-throughput sequencing reads
CUFFLINKS
Transcript assembly, differential expression, and differential regulation for RNA-Seq
WGSIM
Generation of sequenced reads from a reference genome with SNPs and INDEL polymorphisms.
No software to install. No Operating Systems to learn. Focus on Biology.
Scalable Server. Secure Access. Unlimited Storage
Use your institutions private secure and scalable Amazon AWS cloud infrastructure to run BioSerf analytics on genome datasets generated by onsite NGS equipment. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.
Use your institutions private secure and scalable Amazon AWS cloud infrastructure to run BioSerf analytics on genome datasets generated by offsite NGS equipment. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.
Use BioSerf's secure and scalable Amazon AWS cloud infrastructure to run analytics on genome datasets generated by internal or external NGS equipments. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.