SERF


De Novo Sequence Analysis of Genomic Data from Next Generation Sequencers to identify biomarkers.


SERF MASK


De novo Identification and Masking of Repeats in Genomic Data from Next Generation Sequencers.


SERF DB


Database of results from SERF analysis of Genomes.


SERF CHART


Graphical data visualization of SERF analysis results


SERF UTILS


Cluster SERF analysis results by size, position, motif and totals


STAR


Alignment of large high-throughput sequencing reads to a reference genome.


BWA


Alignment of Short Reads from Next Generation Sequencers to a Reference Genome.


BOWTIE


Alignment of Short Reads from Next Generation Sequencers to a Reference Genome.


BOWTIE2


Alignment of Reads from Next Generation Sequencers to a Reference Genome.


SAMTOOLS


Manipulation of read alignments including sorting, merging, indexing, retrieval of reads and Mpileups.


BCFTOOLS


Analytics and utilities for CNVs, Consensus, Annotations and other Variant Calling using VCF or BCF data.


VCFTOOLS


Analytics and utilities for Variant Calling using VCF data.


FASTQC


A high throughput Quality Control analysis of sequenced reads


CUTADAPT


Remove adapter sequences from high-throughput sequencing reads


CUFFLINKS


Transcript assembly, differential expression, and differential regulation for RNA-Seq


WGSIM


Generation of sequenced reads from a reference genome with SNPs and INDEL polymorphisms.


BioSerf Analytics

BioSerf Analytics


BioSerf Workflows

Analytics Workflow


BioSerf De Novo Sequence Analysis

Workflow Workflow

BioSerf Variant Calling Analysis

Workflow

BioSerf RNA-Seq Analysis (STAR)

Workflow

BioSerf RNA-Seq Analysis (TopHat)

Workflow

Web enabled Cloud scale Bioinformatics

No software to install. No Operating Systems to learn. Focus on Biology.

Web User Interface

Cloud Computing Resources

Scalable Server. Secure Access. Unlimited Storage


Deployment Models

IDeployment1

BioSerf Analytics with Onsite NGS

Use your institutions private secure and scalable Amazon AWS cloud infrastructure to run BioSerf analytics on genome datasets generated by onsite NGS equipment. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy

Deployment2

BioSerf Analytics with Offsite NGS

Use your institutions private secure and scalable Amazon AWS cloud infrastructure to run BioSerf analytics on genome datasets generated by offsite NGS equipment. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy

Deployment3

BioSerf Analytics with BioSerf Cloud

Use BioSerf's secure and scalable Amazon AWS cloud infrastructure to run analytics on genome datasets generated by internal or external NGS equipments. Maintain security and privacy of all analytics and results. No hardware or software to install. Access analysis tools and monitor runs using laptops, desktops or mobile devices. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy