SERF
De Novo Sequence Analysis of Genomic Data from Next Generation Sequencers to identify biomarkers.
Web enabled Cloud scale Analytics.
SERF MASK
De novo Identification and Masking of Repeats in Genomic Data from Next Generation Sequencers.
SERF DB
Database of results from SERF de-novo sequence analysis of Plant, Animal an Human Genomes.
SERF CHART
Graphical data visualization of SERF analysis results
SERF UTILS
Cluster results of SERF analysis by size, position, motif and totals
STAR
Alignment of large sets of high-throughput sequencing reads to a reference genome.
BWA
Alignment of Short Reads from Next Generation Sequencers to Reference Genome.
BOWTIE
BOWTIE2
Alignment of Reads from Next Generation Sequencers to Reference Genome.
SAMTOOLS
Manipulation of read alignments including sorting, merging, indexing, retrieval of reads and Mpileups.
BCFTOOLS
Analytics and utilities for CNVs, Consensus, Annotations and other Variant Calling using VCF or BCF data.
VCFTOOLS
Analytics and utilities for Variant Calling using VCF data.
CUTADAPT
Remove adapter sequences from high-throughput sequencing reads
CUFFLINKS
Transcript assembly, differential expression, and differential regulation for RNA-Seq
WGSIM
Generation of sequenced reads from a reference genome with SNPs and INDEL polymorphisms.
No software to install. No operating system commands to learn. Focus on Biology.
Scalable Server and Storage for Analytics
Run analytics securely on scalable cloud server and storage infrastructure. No hardware or software to install. Access analysis tool suite on laptops, desktops or mobile phones. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.
Run analytics on your private inhouse servers. Access analysis tool suite on laptops, desktops or mobile phones. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.
Run analytics on personal Linux or Mac computer. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.