SERF


De Novo Sequence Analysis of Genomic Data from Next Generation Sequencers to identify biomarkers.


SERF MASK


De novo Identification and Masking of Repeats in Genomic Data from Next Generation Sequencers.


SERF DB


Database of results from SERF analysis of Genomes.


SERF CHART


Graphical data visualization of SERF analysis results


SERF UTILS


Cluster SERF analysis results by size, position, motif and totals


STAR


Alignment of large high-throughput sequencing reads to a reference genome.


BWA


Alignment of Short Reads from Next Generation Sequencers to a Reference Genome.


BOWTIE


Alignment of Short Reads from Next Generation Sequencers to a Reference Genome.


BOWTIE2


Alignment of Reads from Next Generation Sequencers to a Reference Genome.


SAMTOOLS


Manipulation of read alignments including sorting, merging, indexing, retrieval of reads and Mpileups.


BCFTOOLS


Analytics and utilities for CNVs, Consensus, Annotations and other Variant Calling using VCF or BCF data.


VCFTOOLS


Analytics and utilities for Variant Calling using VCF data.


CUTADAPT


Remove adapter sequences from high-throughput sequencing reads


CUFFLINKS


Transcript assembly, differential expression, and differential regulation for RNA-Seq


WGSIM


Generation of sequenced reads from a reference genome with SNPs and INDEL polymorphisms.


BioSerf Analytics Workflow

Analytics Workflow


De novo Sequence Analysis

Workflow

BioSerf Variant Calling Workflow

Workflow

BioSerf RNA Sequence Analysis STAR Workflow

Workflow

BioSerf RNA Sequence Analysis TopHat Workflow

Workflow

BioSerf Telomere Analytics Workflow

Workflow

Web enabled Bioinformatics

No software to install. No operating system commands to learn. Focus on Biology.

Web User Interface

Cloud Computing Resources

Scalable Server and Storage for Analytics


Deployment Models

External Cloud

Cloud Server

Run analytics securely on scalable cloud server and storage infrastructure. No hardware or software to install. Access analysis tool suite on laptops, desktops or mobile phones. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy

Inhouse Cloud Server

Inhouse Server

Run analytics on your private inhouse servers. Access analysis tool suite on laptops, desktops or mobile phones. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy

Personal loud

Personal Server

Run analytics on personal Linux or Mac computer. Web User Interface without need for Linux System or Command Line Interface knowhow enables focus on biology.

Deploy